diff --git a/16S_workflow.sh b/16S_workflow.sh index 406752a..81bee32 100755 --- a/16S_workflow.sh +++ b/16S_workflow.sh @@ -51,4 +51,4 @@ otu=">OTU_" vsearch --cluster_fast fasta/prefix_nochim.fasta --id 0.97 --centroids otu/centroids.fasta --relabel $otu # ABONDANCE - +vsearch --usearch_global fasta/amplicon.fasta --db otu/clusters.fasta --id 0.97 --otutabout otu/abondance_table.txt