From 8ff28a2a579f92fc54d8833017344375b1aa33b3 Mon Sep 17 00:00:00 2001 From: nicolas-zimmermann Date: Thu, 24 Oct 2019 11:59:23 +0200 Subject: [PATCH] added otu table creation --- 16S_workflow.sh | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/16S_workflow.sh b/16S_workflow.sh index 406752a..81bee32 100755 --- a/16S_workflow.sh +++ b/16S_workflow.sh @@ -51,4 +51,4 @@ otu=">OTU_" vsearch --cluster_fast fasta/prefix_nochim.fasta --id 0.97 --centroids otu/centroids.fasta --relabel $otu # ABONDANCE - +vsearch --usearch_global fasta/amplicon.fasta --db otu/clusters.fasta --id 0.97 --otutabout otu/abondance_table.txt