added question 3 and 4

2019-10-24 15:00:44 +02:00 · 2019-10-24 15:00:44 +02:00 · d63263b530
parent 959f34d18c
commit d63263b530
1 changed files with 5 additions and 0 deletions
--- a/wgs.sh
+++ b/wgs.sh
@ -24,3 +24,8 @@ grep ">" databases/all_genome.fasta|cut -f 2 -d ">" > results/association.tsv

 # Question 3

+soft/megahit --k-list 21 --mem-flag 0 -1 EchE_R1.fastq.gz -2 EchE_R2.fastq.gz -o contigs
+
+# Question 4
+
+soft/prodigal -i contigs/final.contigs.fa -f fasta > genes.fna