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projet_court_nz
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corrected README content

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Nicolas Zimmermann 2019-09-18 23:38:07 +02:00
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@ -3,15 +3,18 @@ Make sure your current directory is projet_court_nz
Environment Environment
1 - Recreate the conda environment with the config_projet.yml file avaible in the src repository 1 - Recreate the conda environment with the config_projet.yml file avaible in the src repository
$ conda env create -f src/config_projet.yml $ conda env create -f src/environment.yml
2 - Activate the generated environment 2 - Activate the generated environment
$ conda activate projet-court $ conda activate projet-court
toy-example: toy-example:
md.pdb contains structural information of 501 conformations of the calf-1 domain md.pdb contains structural information of 501 conformations of the calf-1 domain
3 - try the program on md.pdb 3 - try the program by parsing the md.pdb sequences into 4 cluster
$ python3 src/projet8 data/md.pdb $ python3 src/projet8.py data/md.pdb 4
$ python3 src/projet8.py [.pdbfile] [number of desired clusters]
Results are generated in the results folder
Informations: Informations: