Réimplémentation du programme DSSP en Python
Thomas Forest fbf8da4ee4 Correct environment.yml | 5 年前 | |
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data | 5 年前 | |
doc | 5 年前 | |
src | 5 年前 | |
README.md | 5 年前 | |
environment.yml | 5 年前 |
Attempt to implement the historic 1983 version of DSSP (Define Secondary Structure of Proteins): Dictionary of protein secondary structure: pattern recognition of hydrogen-bonded and geometrical features. Kabsch W, Sander C, Biopolymers. 1983 222577-2637. PMID: 6667333; UI: 84128824.
These instructions will get you a copy of the project up and running on your local machine for development and testing purposes. See deployment for notes on how to deploy the project on a live system.
You need to have Python 3 and Conda on your machine, as it will be used to deploy the running environnement of DSSP. This program has been tested for Python 3.7.4.
Use conda to create the environment
conda env create --file environment.yml
Load your environnement
conda activate dssp
You should be ready to run the program, by calling, for example
python3 src/dssp.py data/1est.pdb
This project is licensed under the CeCILL-C License - see eCILL-B FREE SOFTWARE LICENSE AGREEMENT for details