added question 5

2019-10-24 15:05:28 +02:00 · 2019-10-24 15:05:28 +02:00 · 82e27ebc44
parent d63263b530
commit 82e27ebc44
1 changed files with 9 additions and 1 deletions
--- a/wgs.sh
+++ b/wgs.sh
@ -28,4 +28,12 @@ soft/megahit --k-list 21 --mem-flag 0 -1 EchE_R1.fastq.gz -2 EchE_R2.fastq.gz -o

 # Question 4

-soft/prodigal -i contigs/final.contigs.fa -f fasta > genes.fna
+soft/prodigal -i contigs/final.contigs.fa -d genes.fna
+
+# Question 5
+
+sed "s:>:*\n>:g" genes.fna | sed -n "/partial=00/,/*/p"|grep -v "*" > genes_full.fna
+
+# Question 6
+
+