added question 5

wgs.sh

@@ -28,4 +28,12 @@ soft/megahit --k-list 21 --mem-flag 0 -1 EchE_R1.fastq.gz -2 EchE_R2.fastq.gz -o
 
 # Question 4
 
-soft/prodigal -i contigs/final.contigs.fa -f fasta > genes.fna
+soft/prodigal -i contigs/final.contigs.fa -d genes.fna
+
+# Question 5
+
+sed "s:>:*\n>:g" genes.fna | sed -n "/partial=00/,/*/p"|grep -v "*" > genes_full.fna
+
+# Question 6
+
+