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projet_court_nz
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corrected README content

Nicolas Zimmermann 4 years ago
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      README

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3 
 Environment
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 Environment
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 1 - Recreate the conda environment with the config_projet.yml file avaible in the src repository
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 1 - Recreate the conda environment with the config_projet.yml file avaible in the src repository
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-	$ conda env create -f src/config_projet.yml
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+	$ conda env create -f src/environment.yml
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 2 - Activate the generated environment
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 2 - Activate the generated environment
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 	$ conda activate projet-court
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 	$ conda activate projet-court
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 toy-example:
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 toy-example:
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 md.pdb contains structural information of 501 conformations of the calf-1 domain
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 md.pdb contains structural information of 501 conformations of the calf-1 domain
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-3 - try the program on md.pdb
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-	$ python3 src/projet8 data/md.pdb
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+3 - try the program by parsing the md.pdb sequences into 4 cluster
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+	$ python3 src/projet8.py data/md.pdb 4
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+	$ python3 src/projet8.py [.pdbfile] [number of desired clusters]
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+
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+Results are generated in the results folder
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 Informations:
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 Informations:
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