44 lines
1.3 KiB
Markdown
44 lines
1.3 KiB
Markdown
# Implementation of the DSSP approach for secondary structure assignation
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Attempt to implement the historic 1983 version of DSSP (Define Secondary Structure of Proteins): Dictionary of protein secondary structure: pattern recognition of hydrogen-bonded and geometrical features. Kabsch W, Sander C, Biopolymers. 1983 222577-2637. PMID: 6667333; UI: 84128824.
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## Getting Started
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These instructions will get you a copy of the project up and running on your local machine for development and testing purposes. See deployment for notes on how to deploy the project on a live system.
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### Prerequisites
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You need to have **Python 3** and **Conda** on your machine, as it will be used to deploy the running environnement of DSSP.
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This program has been tested for Python 3.7.4.
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### Installing
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Use conda to create the environnement
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```
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conda env create --file environment.yml
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```
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Load your environnement
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```
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conda activate dssp
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```
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You should be ready to run the program, by calling, for example
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```
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python3 src/dssp.py data/1est.pdb
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```
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## Author
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* **FOREST Thomas** - *M2BI* - [Univ-Paris-Diderot.fr](https://www.univ-paris-diderot.fr/) - thomas.forest@etu.univ-paris-diderot.fr
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## License
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This project is licensed under the MIT License - see the [LICENSE.md](LICENSE.md) file for details
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## Acknowledgments
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* Hat tip to anyone whose code was used
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* Inspiration
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* etc |