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added otu table creation

master
nicolas-zimmermann 2019-10-24 11:59:23 +02:00
parent 8165ca41a8
commit 8ff28a2a57
1 changed files with 1 additions and 1 deletions
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16S_workflow.sh
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@ -51,4 +51,4 @@ otu=">OTU_"
vsearch --cluster_fast fasta/prefix_nochim.fasta --id 0.97 --centroids otu/centroids.fasta --relabel $otu vsearch --cluster_fast fasta/prefix_nochim.fasta --id 0.97 --centroids otu/centroids.fasta --relabel $otu
# ABONDANCE # ABONDANCE
vsearch --usearch_global fasta/amplicon.fasta --db otu/clusters.fasta --id 0.97 --otutabout otu/abondance_table.txt