added question 6

wgs.sh

 
 # Question 4
 
-soft/prodigal -i contigs/final.contigs.fa -d genes.fna
+soft/prodigal -i contigs/final.contigs.fa -d results/genes.fna
 
 # Question 5
 
-sed "s:>:*\n>:g" genes.fna | sed -n "/partial=00/,/*/p"|grep -v "*" > genes_full.fna
+sed "s:>:*\n>:g" results/genes.fna | sed -n "/partial=00/,/*/p"|grep -v "*" > results/genes_full.fna
 
 # Question 6
 
-
+blastn -query results/genes_full.fna -db databases/resfinder.fna -perc_identity 0.8 -qcov_hsp_perc 0.8 -evalue 1e-3 -outfmt 6 -out results/annoted_genes.dat