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16S_workflow
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added otu table creation

nicolas-zimmermann 5 years ago
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8165ca41a8
commit
8ff28a2a57
1 changed files with 1 additions and 1 deletions
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      16S_workflow.sh

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16S_workflow.sh View File 

@@ -51,4 +51,4 @@ otu=">OTU_"
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 vsearch --cluster_fast fasta/prefix_nochim.fasta --id 0.97 --centroids otu/centroids.fasta --relabel $otu
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 # ABONDANCE
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-
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+vsearch --usearch_global fasta/amplicon.fasta --db otu/clusters.fasta --id 0.97 --otutabout otu/abondance_table.txt