Commit graph

1848102 (HEAD -> master) Fixing some scaling for swp2 output by tforest 2024-02-29 00:59:25 +0100
25d7ef0 Improving sfs plotting by tforest 2024-02-29 00:59:09 +0100
14538a7 Add some outputs for swp2 parsing by tforest 2024-02-26 18:55:05 +0100
7949bef Adjust xlim and ylims for swp2 by tforest 2024-02-25 21:38:38 +0100
658693c Fixing some plotting issues for swp2 by tforest 2024-02-25 17:47:44 +0100
541d1d7 Fixing the sorting of best scenarios for swp2 parsing by tforest 2024-02-25 03:53:32 +0100
0ffb02e Some tweaking of axis limits by tforest 2024-02-25 03:32:01 +0100
03ea6f9 Improve plotting with concordant colours by tforest 2024-02-25 02:10:31 +0100
4aedf5e Improve plotting with swp2 control curve by tforest 2024-02-25 00:27:26 +0100
8c8545a Previous plotting system before feb version by tforest 2024-02-21 22:12:53 +0100
4444903 Update SFS plotting function by tforest 2024-02-21 22:11:24 +0100
fed1a36 Get rid of the old plot_all_epochs_theta by tforest 2023-12-19 02:10:13 +0100
f90938f Save all epochs in JSON by tforest 2023-12-19 01:37:00 +0100
6a6d4bf Remove unused functions for swp2 by tforest 2023-12-08 22:09:53 +0100
8981346 First version of the new layout of combined plots by tforest 2023-12-07 17:35:39 +0100
eb2799b Fixing proportion labels by tforest 2023-12-07 02:22:08 +0100
66d399d Keeping only thetas with the lowest logLik for breakpoints thetas by tforest 2023-12-06 22:30:48 +0100
6287f2a Fixing plot font size issues by tforest 2023-12-05 17:04:36 +0100
2e4aca9 Update on swp2 plots by tforest 2023-12-01 17:08:13 +0100
3f17404 Grid of plots for swp2 thetas by tforest 2023-12-01 10:42:58 +0100
43f689e Some progress on subplots by tforest 2023-12-01 00:48:57 +0100
46a2990 Adjust x-axis ticks for large SFSs by tforest 2023-11-30 22:07:45 +0100
87bef76 Compute proportion of information used for theta plots by tforest 2023-11-29 16:03:15 +0100
23fef17 Ok likelihood swp2 by tforest 2023-11-29 15:29:12 +0100
2253ce5 theoritical logLn swp2 by tforest 2023-11-28 19:36:49 +0100
463b9e6 New plots for swp2 output files by tforest 2023-11-27 13:49:25 +0100
f79d48b Rectify swp2 plot by tforest 2023-11-17 17:12:27 +0100
bbc0641 swp2 plotting improve by tforest 2023-11-10 10:28:43 +0100
ecc6fd2 sfs plotting by tforest 2023-11-10 10:28:31 +0100
592b16e Swp2 plot but reversed by tforest 2023-08-09 11:31:44 +0200
20d66bf Modify the sfs plot by tforest 2023-07-13 15:29:27 +0200
2b5dc75 swp2 plot add by tforest 2023-07-13 15:29:00 +0200
f3fc152 correction of transformed sfs plot by tforest 2023-07-12 16:03:18 +0200
a92dba2 correction for sfs transform plot by tforest 2022-07-08 14:15:41 +0200
a8b5c1a update the sfs_barplot auto title by tforest 2022-05-25 17:00:20 +0200
ec972a7 update sfs plot and vcf parsing by tforest 2022-05-23 20:25:12 +0200
856e20d improve gestion of already parsed vcf for other functions by tforest 2022-02-17 16:38:09 +0100
a7e7895 update output plotting of chrom continuity by tforest 2022-02-16 15:42:34 +0100
8d4d36a better gestion of memory while parsing vcf by tforest 2022-02-15 18:02:06 +0100
a439f0c add stats sfs by tforest 2022-02-14 17:01:12 +0100
0425fcf fix karyotype plot by tforest 2022-02-14 16:25:35 +0100
017bf2c corr. vcf_to_sfs by tforest 2022-02-14 10:32:11 +0100
257c713 update plot lib form multiple chrom coverage by tforest 2022-02-14 10:20:04 +0100
7a08bb7 add scripts for vcf tools by tforest 2022-02-09 15:13:41 +0100
91915e5 Modifs script C by tforest 2021-11-18 11:14:50 +0100
86f84a6 Add C version start by tforest 2021-10-29 16:19:26 +0200
6799dd9 Cleaned by tforest 2021-10-25 11:24:27 +0200
77991f0 Before clean comments by tforest 2021-10-25 11:23:08 +0200
c1e2cc9 add polyallelic snps by tforest 2021-10-22 11:31:06 +0200
110ba26 add comments by tforest 2021-10-19 11:32:30 +0200
a7490ae rectify sfs comp by tforest 2021-10-19 10:43:58 +0200
0e25049 folded version by tforest 2021-10-18 17:11:51 +0200
598fb21 first commit by tforest 2021-10-18 16:17:38 +0200