 tforest
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7949befb40
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Adjust xlim and ylims for swp2
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4 kuukautta sitten |
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tforest
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658693c2a2
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Fixing some plotting issues for swp2
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4 kuukautta sitten |
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tforest
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541d1d7348
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Fixing the sorting of best scenarios for swp2 parsing
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4 kuukautta sitten |
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tforest
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0ffb02e511
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Some tweaking of axis limits
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4 kuukautta sitten |
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tforest
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03ea6f938b
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Improve plotting with concordant colours
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4 kuukautta sitten |
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tforest
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4aedf5e280
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Improve plotting with swp2 control curve
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4 kuukautta sitten |
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tforest
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8c8545a9ff
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Previous plotting system before feb version
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4 kuukautta sitten |
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tforest
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44449033db
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Update SFS plotting function
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4 kuukautta sitten |
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tforest
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fed1a36d79
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Get rid of the old plot_all_epochs_theta
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6 kuukautta sitten |
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tforest
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f90938f8d9
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Save all epochs in JSON
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6 kuukautta sitten |
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tforest
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6a6d4bf6f9
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Remove unused functions for swp2
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6 kuukautta sitten |
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tforest
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89813468b5
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First version of the new layout of combined plots
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6 kuukautta sitten |
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tforest
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eb2799bc98
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Fixing proportion labels
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6 kuukautta sitten |
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tforest
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66d399d6f0
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Keeping only thetas with the lowest logLik for breakpoints thetas
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6 kuukautta sitten |
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tforest
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6287f2aa71
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Fixing plot font size issues
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6 kuukautta sitten |
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tforest
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2e4aca9951
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Update on swp2 plots
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6 kuukautta sitten |
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tforest
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3f174048f1
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Grid of plots for swp2 thetas
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6 kuukautta sitten |
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tforest
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43f689e764
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Some progress on subplots
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6 kuukautta sitten |
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tforest
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46a2990a2d
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Adjust x-axis ticks for large SFSs
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6 kuukautta sitten |
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tforest
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87bef76e28
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Compute proportion of information used for theta plots
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7 kuukautta sitten |
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tforest
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23fef174f2
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Ok likelihood swp2
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7 kuukautta sitten |
|
tforest
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2253ce5f67
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theoritical logLn swp2
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7 kuukautta sitten |
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tforest
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463b9e63f9
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New plots for swp2 output files
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7 kuukautta sitten |
|
tforest
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f79d48bf5b
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Rectify swp2 plot
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7 kuukautta sitten |
|
tforest
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bbc06411e9
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swp2 plotting improve
|
7 kuukautta sitten |
|
tforest
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ecc6fd23fc
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sfs plotting
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7 kuukautta sitten |
|
tforest
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592b16e7f3
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Swp2 plot but reversed
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10 kuukautta sitten |
|
tforest
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20d66bf1cc
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Modify the sfs plot
|
11 kuukautta sitten |
|
tforest
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2b5dc75f30
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swp2 plot add
|
11 kuukautta sitten |
|
tforest
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f3fc152df3
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correction of transformed sfs plot
|
11 kuukautta sitten |
|
tforest
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a92dba2d25
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correction for sfs transform plot
|
1 vuosi sitten |
|
tforest
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a8b5c1aa6f
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update the sfs_barplot auto title
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2 vuotta sitten |
|
tforest
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ec972a7cdf
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update sfs plot and vcf parsing
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2 vuotta sitten |
|
tforest
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856e20d46e
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improve gestion of already parsed vcf for other functions
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2 vuotta sitten |
|
tforest
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a7e78958b2
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update output plotting of chrom continuity
|
2 vuotta sitten |
|
tforest
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8d4d36a1f9
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better gestion of memory while parsing vcf
|
2 vuotta sitten |
|
tforest
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a439f0cef6
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add stats sfs
|
2 vuotta sitten |
|
tforest
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0425fcfa03
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fix karyotype plot
|
2 vuotta sitten |
|
tforest
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017bf2c4ed
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corr. vcf_to_sfs
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2 vuotta sitten |
|
tforest
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257c713458
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update plot lib form multiple chrom coverage
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2 vuotta sitten |
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tforest
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7a08bb7b41
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add scripts for vcf tools
|
2 vuotta sitten |
|
tforest
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91915e5fa8
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Modifs script C
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2 vuotta sitten |
|
tforest
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86f84a676d
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Add C version start
|
2 vuotta sitten |
|
tforest
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6799dd9a53
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Cleaned
|
2 vuotta sitten |
|
tforest
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77991f07ad
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Before clean comments
|
2 vuotta sitten |
|
tforest
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c1e2cc9192
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add polyallelic snps
|
2 vuotta sitten |
|
tforest
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110ba26f7e
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add comments
|
2 vuotta sitten |
|
tforest
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a7490aed15
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rectify sfs comp
|
2 vuotta sitten |
|
tforest
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0e25049a58
|
folded version
|
2 vuotta sitten |
|
tforest
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598fb21351
|
first commit
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2 vuotta sitten |
