tforest
|
1848102140
|
Fixing some scaling for swp2 output
|
2024-02-29 00:59:25 +01:00 |
|
tforest
|
25d7ef0858
|
Improving sfs plotting
|
2024-02-29 00:59:09 +01:00 |
|
tforest
|
14538a747b
|
Add some outputs for swp2 parsing
|
2024-02-26 18:55:05 +01:00 |
|
tforest
|
7949befb40
|
Adjust xlim and ylims for swp2
|
2024-02-25 21:38:38 +01:00 |
|
tforest
|
658693c2a2
|
Fixing some plotting issues for swp2
|
2024-02-25 17:47:44 +01:00 |
|
tforest
|
541d1d7348
|
Fixing the sorting of best scenarios for swp2 parsing
|
2024-02-25 03:53:32 +01:00 |
|
tforest
|
0ffb02e511
|
Some tweaking of axis limits
|
2024-02-25 03:32:01 +01:00 |
|
tforest
|
03ea6f938b
|
Improve plotting with concordant colours
|
2024-02-25 02:10:31 +01:00 |
|
tforest
|
4aedf5e280
|
Improve plotting with swp2 control curve
|
2024-02-25 00:27:26 +01:00 |
|
tforest
|
8c8545a9ff
|
Previous plotting system before feb version
|
2024-02-21 22:12:53 +01:00 |
|
tforest
|
44449033db
|
Update SFS plotting function
|
2024-02-21 22:11:24 +01:00 |
|
tforest
|
fed1a36d79
|
Get rid of the old plot_all_epochs_theta
|
2023-12-19 02:10:13 +01:00 |
|
tforest
|
f90938f8d9
|
Save all epochs in JSON
|
2023-12-19 01:37:00 +01:00 |
|
tforest
|
6a6d4bf6f9
|
Remove unused functions for swp2
|
2023-12-08 22:09:53 +01:00 |
|
tforest
|
89813468b5
|
First version of the new layout of combined plots
|
2023-12-07 17:35:39 +01:00 |
|
tforest
|
eb2799bc98
|
Fixing proportion labels
|
2023-12-07 02:22:08 +01:00 |
|
tforest
|
66d399d6f0
|
Keeping only thetas with the lowest logLik for breakpoints thetas
|
2023-12-06 22:30:48 +01:00 |
|
tforest
|
6287f2aa71
|
Fixing plot font size issues
|
2023-12-05 17:04:36 +01:00 |
|
tforest
|
2e4aca9951
|
Update on swp2 plots
|
2023-12-01 17:08:13 +01:00 |
|
tforest
|
3f174048f1
|
Grid of plots for swp2 thetas
|
2023-12-01 10:42:58 +01:00 |
|
tforest
|
43f689e764
|
Some progress on subplots
|
2023-12-01 00:48:57 +01:00 |
|
tforest
|
46a2990a2d
|
Adjust x-axis ticks for large SFSs
|
2023-11-30 22:07:45 +01:00 |
|
tforest
|
87bef76e28
|
Compute proportion of information used for theta plots
|
2023-11-29 16:03:15 +01:00 |
|
tforest
|
23fef174f2
|
Ok likelihood swp2
|
2023-11-29 15:29:12 +01:00 |
|
tforest
|
2253ce5f67
|
theoritical logLn swp2
|
2023-11-28 19:36:49 +01:00 |
|
tforest
|
463b9e63f9
|
New plots for swp2 output files
|
2023-11-27 13:49:25 +01:00 |
|
tforest
|
f79d48bf5b
|
Rectify swp2 plot
|
2023-11-17 17:12:27 +01:00 |
|
tforest
|
bbc06411e9
|
swp2 plotting improve
|
2023-11-10 10:28:43 +01:00 |
|
tforest
|
ecc6fd23fc
|
sfs plotting
|
2023-11-10 10:28:31 +01:00 |
|
tforest
|
592b16e7f3
|
Swp2 plot but reversed
|
2023-08-09 11:31:44 +02:00 |
|
tforest
|
20d66bf1cc
|
Modify the sfs plot
|
2023-07-13 15:29:27 +02:00 |
|
tforest
|
2b5dc75f30
|
swp2 plot add
|
2023-07-13 15:29:00 +02:00 |
|
tforest
|
f3fc152df3
|
correction of transformed sfs plot
|
2023-07-12 16:03:18 +02:00 |
|
tforest
|
a92dba2d25
|
correction for sfs transform plot
|
2022-07-08 14:15:41 +02:00 |
|
tforest
|
a8b5c1aa6f
|
update the sfs_barplot auto title
|
2022-05-25 17:00:20 +02:00 |
|
tforest
|
ec972a7cdf
|
update sfs plot and vcf parsing
|
2022-05-23 20:25:12 +02:00 |
|
tforest
|
856e20d46e
|
improve gestion of already parsed vcf for other functions
|
2022-02-17 16:38:09 +01:00 |
|
tforest
|
a7e78958b2
|
update output plotting of chrom continuity
|
2022-02-16 15:42:34 +01:00 |
|
tforest
|
8d4d36a1f9
|
better gestion of memory while parsing vcf
|
2022-02-15 18:02:06 +01:00 |
|
tforest
|
a439f0cef6
|
add stats sfs
|
2022-02-14 17:01:12 +01:00 |
|
tforest
|
0425fcfa03
|
fix karyotype plot
|
2022-02-14 16:25:35 +01:00 |
|
tforest
|
017bf2c4ed
|
corr. vcf_to_sfs
|
2022-02-14 10:32:11 +01:00 |
|
tforest
|
257c713458
|
update plot lib form multiple chrom coverage
|
2022-02-14 10:20:04 +01:00 |
|
tforest
|
7a08bb7b41
|
add scripts for vcf tools
|
2022-02-09 15:13:41 +01:00 |
|
tforest
|
91915e5fa8
|
Modifs script C
|
2021-11-18 11:14:50 +01:00 |
|
tforest
|
86f84a676d
|
Add C version start
|
2021-10-29 16:19:26 +02:00 |
|
tforest
|
6799dd9a53
|
Cleaned
|
2021-10-25 11:24:27 +02:00 |
|
tforest
|
77991f07ad
|
Before clean comments
|
2021-10-25 11:23:08 +02:00 |
|
tforest
|
c1e2cc9192
|
add polyallelic snps
|
2021-10-22 11:31:06 +02:00 |
|
tforest
|
110ba26f7e
|
add comments
|
2021-10-19 11:32:30 +02:00 |