tforest
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fed1a36d79
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Get rid of the old plot_all_epochs_theta
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2023-12-19 02:10:13 +01:00 |
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tforest
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f90938f8d9
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Save all epochs in JSON
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2023-12-19 01:37:00 +01:00 |
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tforest
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6a6d4bf6f9
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Remove unused functions for swp2
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2023-12-08 22:09:53 +01:00 |
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tforest
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89813468b5
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First version of the new layout of combined plots
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2023-12-07 17:35:39 +01:00 |
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tforest
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eb2799bc98
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Fixing proportion labels
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2023-12-07 02:22:08 +01:00 |
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tforest
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66d399d6f0
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Keeping only thetas with the lowest logLik for breakpoints thetas
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2023-12-06 22:30:48 +01:00 |
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tforest
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6287f2aa71
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Fixing plot font size issues
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2023-12-05 17:04:36 +01:00 |
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tforest
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2e4aca9951
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Update on swp2 plots
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2023-12-01 17:08:13 +01:00 |
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tforest
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3f174048f1
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Grid of plots for swp2 thetas
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2023-12-01 10:42:58 +01:00 |
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tforest
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43f689e764
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Some progress on subplots
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2023-12-01 00:48:57 +01:00 |
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tforest
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46a2990a2d
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Adjust x-axis ticks for large SFSs
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2023-11-30 22:07:45 +01:00 |
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tforest
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87bef76e28
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Compute proportion of information used for theta plots
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2023-11-29 16:03:15 +01:00 |
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tforest
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23fef174f2
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Ok likelihood swp2
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2023-11-29 15:29:12 +01:00 |
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tforest
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2253ce5f67
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theoritical logLn swp2
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2023-11-28 19:36:49 +01:00 |
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tforest
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463b9e63f9
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New plots for swp2 output files
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2023-11-27 13:49:25 +01:00 |
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tforest
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f79d48bf5b
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Rectify swp2 plot
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2023-11-17 17:12:27 +01:00 |
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tforest
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bbc06411e9
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swp2 plotting improve
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2023-11-10 10:28:43 +01:00 |
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tforest
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ecc6fd23fc
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sfs plotting
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2023-11-10 10:28:31 +01:00 |
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tforest
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592b16e7f3
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Swp2 plot but reversed
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2023-08-09 11:31:44 +02:00 |
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tforest
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20d66bf1cc
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Modify the sfs plot
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2023-07-13 15:29:27 +02:00 |
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tforest
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2b5dc75f30
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swp2 plot add
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2023-07-13 15:29:00 +02:00 |
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tforest
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f3fc152df3
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correction of transformed sfs plot
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2023-07-12 16:03:18 +02:00 |
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tforest
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a92dba2d25
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correction for sfs transform plot
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2022-07-08 14:15:41 +02:00 |
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tforest
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a8b5c1aa6f
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update the sfs_barplot auto title
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2022-05-25 17:00:20 +02:00 |
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tforest
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ec972a7cdf
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update sfs plot and vcf parsing
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2022-05-23 20:25:12 +02:00 |
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tforest
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856e20d46e
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improve gestion of already parsed vcf for other functions
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2022-02-17 16:38:09 +01:00 |
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tforest
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a7e78958b2
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update output plotting of chrom continuity
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2022-02-16 15:42:34 +01:00 |
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tforest
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8d4d36a1f9
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better gestion of memory while parsing vcf
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2022-02-15 18:02:06 +01:00 |
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tforest
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a439f0cef6
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add stats sfs
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2022-02-14 17:01:12 +01:00 |
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tforest
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0425fcfa03
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fix karyotype plot
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2022-02-14 16:25:35 +01:00 |
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tforest
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017bf2c4ed
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corr. vcf_to_sfs
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2022-02-14 10:32:11 +01:00 |
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tforest
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257c713458
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update plot lib form multiple chrom coverage
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2022-02-14 10:20:04 +01:00 |
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tforest
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7a08bb7b41
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add scripts for vcf tools
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2022-02-09 15:13:41 +01:00 |
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tforest
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91915e5fa8
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Modifs script C
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2021-11-18 11:14:50 +01:00 |
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tforest
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86f84a676d
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Add C version start
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2021-10-29 16:19:26 +02:00 |
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tforest
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6799dd9a53
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Cleaned
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2021-10-25 11:24:27 +02:00 |
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tforest
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77991f07ad
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Before clean comments
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2021-10-25 11:23:08 +02:00 |
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tforest
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c1e2cc9192
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add polyallelic snps
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2021-10-22 11:31:06 +02:00 |
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tforest
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110ba26f7e
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add comments
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2021-10-19 11:32:30 +02:00 |
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tforest
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a7490aed15
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rectify sfs comp
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2021-10-19 10:43:58 +02:00 |
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tforest
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0e25049a58
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folded version
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2021-10-18 17:11:51 +02:00 |
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tforest
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598fb21351
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first commit
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2021-10-18 16:17:38 +02:00 |