 tforest
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1848102140
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Fixing some scaling for swp2 output
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vor 8 Monaten |
|
tforest
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25d7ef0858
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Improving sfs plotting
|
vor 8 Monaten |
|
tforest
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14538a747b
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Add some outputs for swp2 parsing
|
vor 8 Monaten |
|
tforest
|
7949befb40
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Adjust xlim and ylims for swp2
|
vor 9 Monaten |
|
tforest
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658693c2a2
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Fixing some plotting issues for swp2
|
vor 9 Monaten |
|
tforest
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541d1d7348
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Fixing the sorting of best scenarios for swp2 parsing
|
vor 9 Monaten |
|
tforest
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0ffb02e511
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Some tweaking of axis limits
|
vor 9 Monaten |
|
tforest
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03ea6f938b
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Improve plotting with concordant colours
|
vor 9 Monaten |
|
tforest
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4aedf5e280
|
Improve plotting with swp2 control curve
|
vor 9 Monaten |
|
tforest
|
8c8545a9ff
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Previous plotting system before feb version
|
vor 9 Monaten |
|
tforest
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44449033db
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Update SFS plotting function
|
vor 9 Monaten |
|
tforest
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fed1a36d79
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Get rid of the old plot_all_epochs_theta
|
vor 11 Monaten |
|
tforest
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f90938f8d9
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Save all epochs in JSON
|
vor 11 Monaten |
|
tforest
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6a6d4bf6f9
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Remove unused functions for swp2
|
vor 11 Monaten |
|
tforest
|
89813468b5
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First version of the new layout of combined plots
|
vor 11 Monaten |
|
tforest
|
eb2799bc98
|
Fixing proportion labels
|
vor 11 Monaten |
|
tforest
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66d399d6f0
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Keeping only thetas with the lowest logLik for breakpoints thetas
|
vor 11 Monaten |
|
tforest
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6287f2aa71
|
Fixing plot font size issues
|
vor 11 Monaten |
|
tforest
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2e4aca9951
|
Update on swp2 plots
|
vor 11 Monaten |
|
tforest
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3f174048f1
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Grid of plots for swp2 thetas
|
vor 11 Monaten |
|
tforest
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43f689e764
|
Some progress on subplots
|
vor 11 Monaten |
|
tforest
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46a2990a2d
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Adjust x-axis ticks for large SFSs
|
vor 11 Monaten |
|
tforest
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87bef76e28
|
Compute proportion of information used for theta plots
|
vor 11 Monaten |
|
tforest
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23fef174f2
|
Ok likelihood swp2
|
vor 11 Monaten |
|
tforest
|
2253ce5f67
|
theoritical logLn swp2
|
vor 11 Monaten |
|
tforest
|
463b9e63f9
|
New plots for swp2 output files
|
vor 1 Jahr |
|
tforest
|
f79d48bf5b
|
Rectify swp2 plot
|
vor 1 Jahr |
|
tforest
|
bbc06411e9
|
swp2 plotting improve
|
vor 1 Jahr |
|
tforest
|
ecc6fd23fc
|
sfs plotting
|
vor 1 Jahr |
|
tforest
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592b16e7f3
|
Swp2 plot but reversed
|
vor 1 Jahr |
|
tforest
|
20d66bf1cc
|
Modify the sfs plot
|
vor 1 Jahr |
|
tforest
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2b5dc75f30
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swp2 plot add
|
vor 1 Jahr |
|
tforest
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f3fc152df3
|
correction of transformed sfs plot
|
vor 1 Jahr |
|
tforest
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a92dba2d25
|
correction for sfs transform plot
|
vor 2 Jahren |
|
tforest
|
a8b5c1aa6f
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update the sfs_barplot auto title
|
vor 2 Jahren |
|
tforest
|
ec972a7cdf
|
update sfs plot and vcf parsing
|
vor 2 Jahren |
|
tforest
|
856e20d46e
|
improve gestion of already parsed vcf for other functions
|
vor 2 Jahren |
|
tforest
|
a7e78958b2
|
update output plotting of chrom continuity
|
vor 2 Jahren |
|
tforest
|
8d4d36a1f9
|
better gestion of memory while parsing vcf
|
vor 2 Jahren |
|
tforest
|
a439f0cef6
|
add stats sfs
|
vor 2 Jahren |
|
tforest
|
0425fcfa03
|
fix karyotype plot
|
vor 2 Jahren |
|
tforest
|
017bf2c4ed
|
corr. vcf_to_sfs
|
vor 2 Jahren |
|
tforest
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257c713458
|
update plot lib form multiple chrom coverage
|
vor 2 Jahren |
|
tforest
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7a08bb7b41
|
add scripts for vcf tools
|
vor 2 Jahren |
|
tforest
|
91915e5fa8
|
Modifs script C
|
vor 3 Jahren |
|
tforest
|
86f84a676d
|
Add C version start
|
vor 3 Jahren |
|
tforest
|
6799dd9a53
|
Cleaned
|
vor 3 Jahren |
|
tforest
|
77991f07ad
|
Before clean comments
|
vor 3 Jahren |
|
tforest
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c1e2cc9192
|
add polyallelic snps
|
vor 3 Jahren |
|
tforest
|
110ba26f7e
|
add comments
|
vor 3 Jahren |
